Binder Design MCPs

Design protein binders and nanobodies targeting specific proteins.

MCP	Runtime	Description
BindCraft MCP	docker	BindCraft for protein binder design (RFdiffusion + ProteinMPNN + AF2)
BoltzGen MCP	docker	BoltzGen for nanobody CDR loop design

Install

These are Docker MCPs — local build is recommended:

cd tool-mcps/bindcraft_mcp && docker build -t bindcraft_mcp:latest . && cd ../..
cd tool-mcps/boltzgen_mcp && docker build -t boltzgen_mcp:latest . && cd ../..

pmcp install bindcraft_mcp
pmcp install boltzgen_mcp