Protein Design MCPs

Design protein sequences and structures using deep learning and physics-based methods.

MCP	Runtime	Description
ProteinMPNN MCP	python	ProteinMPNN for protein design (inverse folding)
LigandMPNN MCP	python	LigandMPNN for ligand-aware scaffold-based sequence generation
RFdiffusion2 MCP	python	RFdiffusion2 for protein structure generation (backbone)
Rosetta MCP	python	Rosetta molecular modeling and protein design suite

Install

pmcp install proteinmpnn_mcp
pmcp install ligandmpnn_mcp
pmcp install rfdiffusion2_mcp
pmcp install rosetta_mcp