Sequence Analysis MCPs

Search, align, and annotate protein sequences.

MCP	Runtime	Description
MMseqs2 MCP	python	Sequence search, clustering, and MSA generation using MMseqs2
MSA MCP	python	Generate Multiple Sequence Alignments (MSA) using ColabFold server
InterPro MCP	python	InterProScan for protein domain and functional analysis

Install

pmcp install mmseqs2_mcp
pmcp install msa_mcp
pmcp install interpro_mcp